rs257568595 SNP Detail

Summary

• ID
  rs257568595
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86286381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATTTTCT GGCATCTTCC
  ACAAAAAAAA AAAAAAAAAA AAAAAAAAAA CCCAGTTAAA GGGATCCCTT TAAGTTATTT
  GCTGGGGAAG GGGGTATCTC GAAATCACCT CTTAAAGCAG CACCACGTAA CCCAACTGCT
  TCCCACTTTC TCTCGCTTCC AGCCCCACCA CGTGGAGTCA CCACGCCGCC ACCTCAGGGG
  Y
  CCACCACGTG TCCATCCCGG TCACCGGCAG AGACAGCAGA TCGCCGGGCC ACCCATCCAT
  CCCCACGCTG CCGTCCCCCT TTCCGGGGTA CTACAGACAC TCCCCCACTG CCCCGGGTCG
  CGCGACACGT GCGGGGCTCC GCAGAGCACG TGGCGGGCCG CGCACCAGAG CACGTGCGCG
  GGGAGGCGGG GCCCCGGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350367751	MGP_WTSI_1_88255234	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	T	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257568595					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350367751	MGP_WTSI_1_88255234	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86286381 () rs orientation: forward

Symbol	Name	Function Class
C130036L24Rik	RIKEN cDNA C130036L24 gene	925 bp upstream
Cpgi503	CpG island 503	within coordinates
D1Mit516	DNA Segment, Chr 1, Massachusetts Institute of Technology-516	551 bp distal
Gm71192	predicted gene, 71192	993 bp downstream
Ncl	nucleolin	within coordinates
Rr29752	regulatory region 29752	within coordinates
Rr396146	regulatory region 396146	656 bp upstream
Tssr142	transcription start site region 142	1628 bp downstream
Tssr7746	transcription start site region 7746	1598 bp downstream
Tssr7747	transcription start site region 7747	1546 bp downstream
Tssr7748	transcription start site region 7748	1365 bp downstream
Tssr7749	transcription start site region 7749	894 bp upstream
Tssr7750	transcription start site region 7750	979 bp upstream
Tssr12777	transcription start site region 12777	1587 bp upstream
Tssr12778	transcription start site region 12778	1510 bp upstream
Tssr12779	transcription start site region 12779	1491 bp upstream
Tssr12780	transcription start site region 12780	1438 bp upstream
Tssr12781	transcription start site region 12781	1390 bp upstream
Tssr12782	transcription start site region 12782	1315 bp upstream
Tssr12783	transcription start site region 12783	1281 bp upstream
Tssr12784	transcription start site region 12784	1254 bp upstream
Tssr12785	transcription start site region 12785	1225 bp upstream
Tssr12786	transcription start site region 12786	427 bp upstream
Tssr12787	transcription start site region 12787	178 bp upstream
Tssr12788	transcription start site region 12788	311 bp downstream
Tssr12789	transcription start site region 12789	359 bp downstream
Tssr12790	transcription start site region 12790	699 bp downstream
Tssr12791	transcription start site region 12791	822 bp downstream
Tssr12792	transcription start site region 12792	1292 bp downstream