rs257574412 SNP Detail

Summary

• ID
  rs257574412
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:89731921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTAGTGG TGGCTCAAGC
  CTTTAATCCC AGCACTTGAG AGGCAGAGGC AGGCAGGTTT CTTGGTTCGA GGCCAGCCTG
  GTTTACAGAC TGAGTTCCAG GACAGCCAGG GCTATACAGA GAAACCCTGT CTGAAAAAAA
  AACCAAACCA AACCAAACCC CCAAAAGTGA AAGGAGAACT GTTAGATGAC CAGAGACATA
  S
  CGGGAGGAGT CTAAGTCACT GTTCCATTGA GACATGTGTA CATCTTGTAT GGAGCTGCTT
  TATTCTCAAC AGCCAAGATA TGGAATCAGC CTAGGTACCA TCGACAGATG AAGGGACAAA
  GAAAGTGTGA TGAACAATGA ACAAGAGATT CCCCCCCCCA ATAATAAAGA ACAAAACTAT
  ATGATCTGCA AGAAAGTAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375503428	MGP_WTSI_8_91529192	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257574412					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375503428	MGP_WTSI_8_91529192	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:89731921 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20796	CpG island 20796	1141 bp proximal
Gm56831	predicted gene, 56831	489 bp downstream
Rr1386	regulatory region 1386	596 bp distal
Rr366841	regulatory region 366841	within coordinates
Rr406251	regulatory region 406251	526 bp proximal
Tssr78676	transcription start site region 78676	1430 bp downstream
Tssr82368	transcription start site region 82368	1319 bp downstream
Tssr82369	transcription start site region 82369	1347 bp downstream
Tssr82370	transcription start site region 82370	1366 bp downstream
Tssr82371	transcription start site region 82371	1378 bp downstream
Tssr82372	transcription start site region 82372	1404 bp downstream
Tssr82373	transcription start site region 82373	1986 bp downstream