rs257575437 SNP Detail

Summary

• ID
  rs257575437
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115106988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCGAATTT AAATGGAAAG
  CAAATAGCTC GCTGTTAGCA TTAAAGAAAA GCAACCTGGG AGGGACAGCA CTCTAGCCTC
  CTCCCCGCTC AGCCTCTCTC CCCTGCCCCT TTCTCCCAGC TGCTGAGAGA CCCTCTCTTT
  TCCTGGCTCC TCTGCCCTCC CAACTCCCCC AGCCCTCTTC TCCCATCTCA TCCTCCTCAC
  Y
  GCCCCTGTCC CCTCTGCCTC CAGGATTCTG CCTGTTCCCC TGCAGGGAGC ACTTTGACCT
  CTGTTCCAGC TGCTTTGGAC CAGGCTCCCC TCCAGCCCCC ACTGCCCCCA CCGTGAGGGC
  TGCTGATCAA GAGGTCCCAC CTAGCCAGGT AAGAAGACCC TTGGCATCCC TGGCCCCTCA
  GCCTCATATT AAGCCCCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366346703	MGP_WTSI_5_115418938	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257575437					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366346703	MGP_WTSI_5_115418938	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115106988 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16345	CpG island 16345	1664 bp proximal
Gm71622	predicted gene, 71622	within coordinates
Hnf1a	HNF1 homeobox A	within coordinates
Hnf1aos1	HNF1 homeobox A, opposite strand 1	within coordinates
Hnf1aos2	HNF1 homeobox A, opposite strand 2	within coordinates
Rr124128	regulatory region 124128	within coordinates
Rr618080	regulatory region 618080	711 bp distal
Rr618081	regulatory region 618081	96 bp distal
Rr618082	regulatory region 618082	472 bp proximal
Tssr48194	transcription start site region 48194	156 bp downstream
Tssr48195	transcription start site region 48195	121 bp downstream
Tssr48196	transcription start site region 48196	94 bp downstream
Tssr48197	transcription start site region 48197	941 bp upstream
Tssr52748	transcription start site region 52748	1944 bp downstream