rs257575975 SNP Detail

Summary

• ID
  rs257575975
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69817212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CAAAGACACA
  GACACACACA CACACAGACA GAGACACACA CACACAGATA CACACACACA CACACACACA
  CACACACACA CACACACACA CACACACACG AATGCACGAG TGTCATTGCC TCTTTGTAGT
  GCCCGTTCTT GCTTTGTGAC CAATAACTAC CATTAGTGTC TGTTTTATTA TTGTTTAATG
  W
  TTTCTAACAT TGGCACTTAG CATCTTTTTT TTTCCAAATA ATATTTGATA GTTGCTACTT
  TCCTTGTTCT TATGGAAAAA CACGGGACGA AAAGCAGTGT ACAGGAAGAA GGATTTATTT
  TGGCTTGCGG TTTGAAGGGA TCCAGTCCAC AGTGGCAGGA GTATGATATA GCTGACACCA
  TGGCAGTCAG AAAGCAGAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324085547	CHEV_12_70871425	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257575975					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69817212 () rs orientation: forward

Symbol	Name	Function Class
Cdkl1	cyclin dependent kinase like 1	within coordinates
Tssr116525	transcription start site region 116525	1131 bp upstream
Tssr116526	transcription start site region 116526	696 bp upstream