rs257582696 SNP Detail

Summary

• ID
  rs257582696
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79990998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGTCAGA GAGGCGCGGA
  CAGAAAAAAC CAGGGTAGTG GCCGCCTTCT GCATCCCGTG TAGTCTGGCA CAAATGGGGG
  TGGTGAGCCA GGGCTGGAGA GAAGCAAGAC GTCTATAGAG AAGGGAGGTT ACCCACATCC
  CCTTCACCCT GCTCAAAGTG CAAAATGGGG TCCAAGTCCC AAAGAGAAGA GAAGAGGAGG
  Y
  TCTCTCCACC CCTCACCATC AGATCTCCCG TACCCCAAGT CACCCTCAGA GGATAGGGAA
  AGTATTATAC CTGAGAGGTC GGTTGGCTGG GCAAGATTCA TCCAACTGAA AAGCAGTCCC
  CCACACAGGC CTGTCAGCAG GAGCCCTGGA CCTCTCCCCT GGAGGCCCAT AAGAAGTCGC
  CTCCACCTCA GTCGTAGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372043625	MGP_WTSI_7_87486136	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257582696					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372043625	MGP_WTSI_7_87486136	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79990998 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19331	CpG island 19331	752 bp distal
Cpgi19332	CpG island 19332	1633 bp proximal
Hddc3	HD domain containing 3	1854 bp upstream
Rr400403	regulatory region 400403	849 bp downstream
Rr400404	regulatory region 400404	1693 bp upstream
Rr649870	regulatory region 649870	541 bp distal
Rr649871	regulatory region 649871	882 bp distal
Rr649872	regulatory region 649872	213 bp distal
Rr649873	regulatory region 649873	1373 bp proximal
Rr649874	regulatory region 649874	1817 bp proximal
Tssr67435	transcription start site region 67435	1841 bp upstream
Tssr67436	transcription start site region 67436	1915 bp upstream
Tssr73215	transcription start site region 73215	1240 bp upstream
Tssr73216	transcription start site region 73216	1100 bp upstream
Tssr73217	transcription start site region 73217	1040 bp upstream
Tssr73218	transcription start site region 73218	1019 bp upstream
Unc45a	unc-45 myosin chaperone A	250 bp upstream