rs257586033 SNP Detail

Summary

• ID
  rs257586033
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138148730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGAG CGCAGTAGCC GAAACTCAGG
  M
  TCCGAAACGC GGGCCCCGCC CTTCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320980173	CHEV_3_138105933	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257586033					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138148730 () rs orientation: forward

Symbol	Name	Function Class
Adh5	alcohol dehydrogenase 5 (class III), chi polypeptide	Intron
Cpgi13874	CpG island 13874	within coordinates
Gm64924	predicted gene, 64924	within coordinates
Rr398071	regulatory region 398071	within coordinates
Rr586135	regulatory region 586135	382 bp distal
Rr586136	regulatory region 586136	within coordinates
Rr586137	regulatory region 586137	135 bp proximal
Rr586138	regulatory region 586138	584 bp proximal
Rr586139	regulatory region 586139	1439 bp proximal
Tssr31984	transcription start site region 31984	116 bp upstream