rs257586944 SNP Detail

Summary

• ID
  rs257586944
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:73058489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGCCTTG CTGCTCATCA
  CAGGGATCAC AGCGAAGATG GACACCGTGC GCGCTCCCTC TAGAGTGGAG TGAGAAAGAC
  AGTAGAGTGT GTCTGCAGAT GGGATCCAGT CAGTGTTGCT AAGTGCAGCG GTGTGCTTGG
  CCCTGAGCCA ACAGGCCAAC ATCAGCCTGG CGGTGTGACT CCCATTATTG TGAGGGTTCC
  Y
  ATGCATCCAG CTCTGCTTCC AGAAGGCTGA GGCAGTATAG GAGTCCCTGC CTCTAAGGGA
  GGGAGGGAGG GAGAAGATCC CAAACAAGCA AAATTAAAGT AGCTCAGAGA TGCCTAAAAA
  CAGCTAAGTA GTAGCTACGG TGTCCGTCTA GCAGGAAGGG CCGTGTGGAG CAGCCCCTTG
  GATACCTGCG ATTGCAGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394546536	MGP_WTSI_15_73017070	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257586944					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394546536	MGP_WTSI_15_73017070	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:73058489 () rs orientation: forward

Symbol	Name	Function Class
Ago2	argonaute RISC catalytic subunit 2	1712 bp upstream
Cpgi7161	CpG island 7161	896 bp distal
Rr369949	regulatory region 369949	294 bp upstream
Rr404436	regulatory region 404436	1369 bp downstream
Rr504021	regulatory region 504021	1215 bp distal
Rr504022	regulatory region 504022	1382 bp distal
Rr504023	regulatory region 504023	1168 bp distal
Rr504024	regulatory region 504024	within coordinates
Rr504025	regulatory region 504025	372 bp proximal
Tssr134684	transcription start site region 134684	1669 bp upstream
Tssr134685	transcription start site region 134685	1384 bp upstream
Tssr134686	transcription start site region 134686	1357 bp upstream
Tssr134687	transcription start site region 134687	1323 bp upstream
Tssr134688	transcription start site region 134688	1289 bp upstream