rs257592870 SNP Detail

Summary

• ID
  rs257592870
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:67469467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGGGGC GGACACCCAG
  CCGGGTCCCG GTCCTGGTCC CGGACCCGGC GGCATTTGTG TTTCAGGTTC CTAATGGAGG
  GTTATTCTCA CGTAGCTGGA GGCGAAGGAG ATGGAAGCAA CCCTCTGGGC GCCACGATTG
  CGCGCCGCAG CCACCAGCAC CGCTTCTTTA GCACGGGTGG TCAATTCTTC CGCCACCCCT
  Y
  CCTAAGACCT TGACAAACAT AATCAAAGCC AAGGCGGTTG GCAGAACCGC TCTCGGCGCG
  CACAAGCGTT ACAGCTTAGG GCACAAGGCC GACTGCTCCT CTATACTCGG TCTGGAACTT
  CATTTATGCG TAAAAGGGAC TTCTGGACTT TGGGCTCACC ACCCTAGGAA CCCCAAGTGG
  TCGGTCCGCA GTCTGTCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391397552	MGP_WTSI_14_67850855	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257592870					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391397552	MGP_WTSI_14_67850855	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:67469467 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6656	CpG island 6656	1346 bp distal
Cpgi6657	CpG island 6657	within coordinates
Cpgi6658	CpG island 6658	1199 bp proximal
Ebf2	early B cell factor 2	1274 bp upstream
Gm20675	predicted gene 20675	419 bp downstream
Rr297417	regulatory region 297417	1466 bp distal
Rr297418	regulatory region 297418	within coordinates
Tssr126327	transcription start site region 126327	1164 bp upstream
Tssr126328	transcription start site region 126328	1268 bp upstream
Tssr126329	transcription start site region 126329	1417 bp upstream
Tssr126330	transcription start site region 126330	1884 bp upstream