rs257594052 SNP Detail

Summary

• ID
  rs257594052
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:52258780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCCGTGT GTGCATGCGC
  AATAGCCACG TTTTCTCTTC CGATTTCCAG CTCTTAGGGC GGGAGGGTGG GGACACTGGC
  TAATGTTGCT AAACCTGACG GTGCATTCCA GCCAGAAGCT GCCTATGGAA GCTACTGAGC
  AAGTTTTGTT GAATCAATGG TTCCTCCTTC TATGATTGAC AAGCTGGGGT TCTAGGCCAA
  Y
  GTATTATTAC ATACTAGCTG CCCCACCTCA GTGGTGTTAC CTTGCTTGGG TAACAAGGTT
  TCCAAAGTTT ACTTCACTTG GCAATTAAGG TAAAGTGAAA GTGTTATCAC TTGGTACATA
  GCACTCATCT TACTGCATCA CAGATCGTAT ATTTCTAAAG CAACCACTTG GGATGCTGTA
  ATCATCTTAT AAACTAGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380399807	MGP_WTSI_10_52102490	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257594052					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380399807	MGP_WTSI_10_52102490	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:52258780 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1535	CpG island 1535	153 bp distal
Gm47580	predicted gene, 47580	1458 bp upstream
Gm67152	predicted gene, 67152	within coordinates
Gopc	golgi associated PDZ and coiled-coil motif containing	560 bp upstream
Rps19-ps10	ribosomal protein S19, pseudogene 10	1975 bp downstream
Rr431353	regulatory region 431353	405 bp distal
Rr431354	regulatory region 431354	within coordinates
Tssr93299	transcription start site region 93299	1185 bp downstream
Tssr97576	transcription start site region 97576	744 bp upstream
Tssr97577	transcription start site region 97577	706 bp upstream
Tssr97578	transcription start site region 97578	542 bp upstream