rs257595087 SNP Detail

Summary

• ID
  rs257595087
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46540040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAACTCCAG CCCCAAGGAA
  TCCAGAGCCC TCTTTTGGTC CCTGAGGAAC TAAGAACTGT GCGCTGTGTG GTGTACAGAC
  ATACATAGAT GCAAGCACAC ATTCCCCCCA TTTTCTTTTT TTTTAATCAT GACGGTAGGG
  GCTTGGAGGG ATGGCTTAGT GGTTAATAAA GCTTACTGCT TTTTCAGACA ACCAGAGTTA
  R
  TGCCCAACAC CAGGCTGACT TGCTCACAGC CGCTTGTAAC AAGCTCCAGG GGACCCATGG
  TCTCTTTTGG CCTCTGAGGT CACCTGTACT CATATACATA CCCCACACAG ACATGCACAT
  ACACTTAGCT GAAAAGAAAG TAAATCTCTG TCTAAACAAA GATCATGATA GAACTTTTCT
  TCCTCCCCTC CCTTCAGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325404754	CHEV_17_46366063	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257595087					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46540040 () rs orientation: forward

Symbol	Name	Function Class
Tssr144833	transcription start site region 144833	1334 bp downstream
Tssr144834	transcription start site region 144834	1315 bp downstream
Tssr144835	transcription start site region 144835	1306 bp downstream
Tssr144836	transcription start site region 144836	1284 bp downstream
Tssr144837	transcription start site region 144837	1244 bp downstream
Xpo5	exportin 5	within coordinates