rs257601699 SNP Detail

Summary

• ID
  rs257601699
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:90978660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAATGTTCA TACCTTCCCA
  CATTCCAGAA GTTTGTAGAG TCCCTTCACA CTCATAAACC TTGCTGTGCC TTGCAAAACA
  TTAAAAAGGC TGATGTCGGG TTGGGGGGCT GTCAAAGAGG GGCATCAGAG AGGGACTGGC
  ATAAGAATTA ATGGAAGGTA GTTTGGGGTC TTTACCCTTT GTCAGAACAT AGGTCGATTC
  R
  TTTACTTTTT ATTTAGTTTT AAGACAGGGT CAAACTCTGC AGCCCTGTCT GTTTTGGAAC
  TTTATCTATA TACCAGGCTG GCCGAGAACT CAGAGAGATG CCTGCCGCTG CCTCCCTAGA
  ACTGGGTGGG ATTTTTTTGT TTGTTTGTTT TTGGAGACAG TGTTTCAGGT AGCCAAGGCT
  GGCTTCAAAC TTGGTGTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350468111	MGP_WTSI_1_92947515	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257601699					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350468111	MGP_WTSI_1_92947515	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:90978660 () rs orientation: forward

Symbol	Name	Function Class
Cpgi568	CpG island 568	1572 bp proximal
Gm70621	predicted gene, 70621	1498 bp upstream
Lrrfip1	leucine rich repeat (in FLII) interacting protein 1	within coordinates
Rr18304	regulatory region 18304	541 bp proximal
Rr29813	regulatory region 29813	1140 bp proximal
Rr396168	regulatory region 396168	1823 bp upstream
Tssr8030	transcription start site region 8030	1402 bp downstream
Tssr8031	transcription start site region 8031	1233 bp downstream
Tssr12924	transcription start site region 12924	1878 bp downstream
Tssr12925	transcription start site region 12925	1896 bp downstream
Tssr12926	transcription start site region 12926	1916 bp downstream
Tssr12927	transcription start site region 12927	1949 bp downstream