rs257606012 SNP Detail

Summary

• ID
  rs257606012
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45109287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACGGTGCA GACTGGTCCT
  AGGAGCTGAA GGCAGCGAGG AGATGGTCCC GGAGGCTGCG ACTGGAGAGA CTTGTAAAGG
  CGGCTGGAAG CGAGTACAGT GGGAATCCCC GGGTCTGTTC CGTTCAAACA CTGTTGAAGC
  AAGACACAGA TCCACGGGAC CTCCAAGGCG CTGCTCTAAG TCCCGGGCAA GGAGCGCTCC
  W
  TTTATAGCAT GTTGACCCTC CGGAGGGAGG GGTGCCCCAG GCCCGAGACT AACCAATCGG
  CGGTGGCGTG AGGCGGAGAC GGAAAAGTAT ACTTGACCAA TCCGGAGCTG AGGGGAACCT
  CGCTCCCCAC CCACCCAGTC CCATGAGATG AAGTCACGGG ACTGGAGCGC GAGGCCTTGT
  GAAATGGAGG CTTGGGGGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371177624	MGP_WTSI_7_52715233	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257606012					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371177624	MGP_WTSI_7_52715233	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45109287 () rs orientation: forward

Symbol	Name	Function Class
Bax	BCL2-associated X protein	1834 bp downstream
Cpgi19060	CpG island 19060	433 bp distal
Cpgi19061	CpG island 19061	within coordinates
Ftl1	ferritin light polypeptide 1	mRNA-UTR
Gm10252	predicted gene 10252	within coordinates
Gm56125	predicted gene, 56125	1666 bp upstream
Gm73429	predicted gene, 73429	319 bp downstream
Gm73431	predicted gene, 73431	1146 bp upstream
Rr380754	regulatory region 380754	within coordinates
Rr646449	regulatory region 646449	1904 bp distal
Rr646450	regulatory region 646450	within coordinates
Rr646451	regulatory region 646451	225 bp proximal
Rr646452	regulatory region 646452	656 bp proximal
Rr646453	regulatory region 646453	1157 bp proximal
Rr646454	regulatory region 646454	1590 bp proximal
Tssr66539	transcription start site region 66539	1777 bp downstream
Tssr66540	transcription start site region 66540	1673 bp downstream
Tssr66541	transcription start site region 66541	175 bp downstream
Tssr66542	transcription start site region 66542	1201 bp upstream
Tssr72390	transcription start site region 72390	1661 bp upstream
Tssr72391	transcription start site region 72391	1639 bp upstream
Tssr72392	transcription start site region 72392	1515 bp upstream
Tssr72393	transcription start site region 72393	1450 bp upstream
Tssr72394	transcription start site region 72394	1304 bp upstream
Tssr72395	transcription start site region 72395	438 bp upstream
Tssr72396	transcription start site region 72396	406 bp upstream
Tssr72397	transcription start site region 72397	132 bp upstream
Tssr72398	transcription start site region 72398	within coordinates
Tssr72399	transcription start site region 72399	1059 bp downstream
Tssr72400	transcription start site region 72400	1097 bp downstream