rs257618409 SNP Detail

Summary

• ID
  rs257618409
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138234121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGAGATA GCCAACGAAC
  ACTTAATTTT AGAAATAGGA ACTTTCAAGA TTACCTTTTC TTAAATTAAA AGAAAAAACA
  TTTTTTTTTA AAGCATGGTG GGGGCAGTGG CGCGAGCCGC GACTTGCGAG TGGAGGTCAG
  AGGACAGCTT TTAGAGTCCC GAGGATCGAG ATTCAGGCGC TTTTCTCGAA CCATCACTTA
  R
  GCTCATCAGC ATTTGCTTTT CCATTTGATG TTTCCTTCTT AACTTTATAC TGCTTCCCTC
  TTAATGAAAG CGCTATTTTG AAATTAATTG AAGCAAGATG CACATAGAGC ATCACGGCGT
  AACTCCGGTA GCCCGAAGGT GGTGATTTTT TTTTTTTTTT TTTCTTCTGT CATGGTTTGG
  GTTTGCCAGC AGCTGGCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359912486	MGP_WTSI_3_138191324	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257618409					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359912486	MGP_WTSI_3_138191324	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138234121 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eif4e	eukaryotic translation initiation factor 4E			Intron
				mRNA-UTR
Mir1956	microRNA 1956			1875 bp downstream
Rr398072	regulatory region 398072			1131 bp downstream
Rr586157	regulatory region 586157			1622 bp distal
Rr586158	regulatory region 586158			1054 bp distal
Rr586159	regulatory region 586159			1435 bp distal
Rr586160	regulatory region 586160			within coordinates
Rr586161	regulatory region 586161			695 bp distal
Tssr31990	transcription start site region 31990			1924 bp downstream
Tssr31991	transcription start site region 31991			1902 bp downstream
Tssr31992	transcription start site region 31992			1839 bp downstream
Tssr31993	transcription start site region 31993			1809 bp downstream
Tssr31994	transcription start site region 31994			1778 bp downstream
Tssr31995	transcription start site region 31995			1729 bp downstream
Tssr31996	transcription start site region 31996			1071 bp downstream
Tssr31997	transcription start site region 31997			234 bp upstream
Tssr35899	transcription start site region 35899			1397 bp upstream
Tssr35900	transcription start site region 35900			1358 bp upstream