rs257630235 SNP Detail

Summary

• ID
  rs257630235
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:8475078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT TTTTTTTCCT
  TTTTGGCGGT GGTTTTGATT GCCTCCCTGG TAGTCGGGAT AAGGCCTGTA GGCGACGCTG
  TGCAAGCAAG GAGCCGGTCG CTCTGGCGCT GCGATCTAGG TGTGGGTGGA GCCCAGGCCA
  TCCTGACGCC GGGCACCGGA GCCCCGGCAC CGGCGCACTT CAAAACATCG TTTTCCTCTG
  W
  ATGTTGAAAA CTCAGAGGCT CTGGACAAGG CTGGAGTACA AAATGTGAAT ACGAATACAG
  TACCGTACCC GATGGTAGTG TCTTACTGTA AAACCGGAGG GCATTTCATC GCCACACAGT
  TTTCTGTTTG CTTGCTTGTT TGTTTGTTTG TTTTTGTATA AATTGTAAGG GGGCTAATTC
  TTCAGGTAAA AAGTGCCAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392965655	MGP_WTSI_15_8395594	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257630235					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392965655	MGP_WTSI_15_8395594	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:8475078 () rs orientation: forward

Symbol	Name	Function Class
AW557046	expressed sequence AW557046	within coordinates
Cpgi6933	CpG island 6933	within coordinates
Cpgi6934	CpG island 6934	387 bp proximal
Gm63261	predicted gene, 63261	within coordinates
Nipbl	NIPBL cohesin loading factor	1131 bp upstream
Rr369900	regulatory region 369900	within coordinates
Rr499034	regulatory region 499034	1142 bp distal
Rr499035	regulatory region 499035	258 bp distal
Rr499036	regulatory region 499036	within coordinates
Rr499037	regulatory region 499037	119 bp distal
Rr499038	regulatory region 499038	942 bp proximal
Tssr4546	transcription start site region 4546	717 bp upstream
Tssr130591	transcription start site region 130591	1958 bp downstream
Tssr130592	transcription start site region 130592	845 bp downstream
Tssr130593	transcription start site region 130593	621 bp downstream
Tssr130594	transcription start site region 130594	174 bp downstream
Tssr130595	transcription start site region 130595	24 bp downstream
Tssr130596	transcription start site region 130596	594 bp upstream
Tssr133664	transcription start site region 133664	1385 bp upstream
Tssr133665	transcription start site region 133665	1348 bp upstream
Tssr133666	transcription start site region 133666	1146 bp upstream
Tssr133667	transcription start site region 133667	1088 bp upstream
Tssr133668	transcription start site region 133668	926 bp upstream