rs257636622 SNP Detail

Summary

• ID
  rs257636622
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:15196001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACGGGCC CCGCGCCCTG
  CTCCTCGAGC TTGCGGATGA CTGCGGCCAG CGTCAGGTTG GCGCTGCGCA GCTCGGGGTC
  CTTGGTGAGG TCGAGCGTGC GACAGTAAGG GGGCTCGTTG AGGTAGCGGT TGAGGGAGCT
  GCGGATACTG ATGAGCGAGG ACTTGCTGTA GAGCTGGCCG CTCTTAGAAC GGGCCTCGGC
  R
  TAGAAGGAGC GCAGCACGCG GCACAGCGCC CCCTTGTCCA TGGTCTCGAA GTCCGGGCTC
  TGAGCCTTTT CGCTCAGGTA CTCCCGGAAG ATGCGCACGG CGTAGCGGGT GGCCAGCCTG
  GTGTTCTCGC TCAGCCGGGC CCGCTCGGGG CGCTGCAGCA CGTCGGGGTC CAGCTCCGCG
  CTGTCCCCCG GCGGCCCCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325532711	CHEV_18_15221453	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257636622					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:15196001 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9734	CpG island 9734	within coordinates
Gm58434	predicted gene, 58434	1060 bp upstream
Kctd1	potassium channel tetramerisation domain containing 1	within coordinates
Rr393313	regulatory region 393313	1911 bp downstream
Rr534350	regulatory region 534350	664 bp proximal
Tssr152510	transcription start site region 152510	616 bp downstream
Tssr152511	transcription start site region 152511	685 bp downstream
Tssr152512	transcription start site region 152512	1133 bp downstream
Tssr152513	transcription start site region 152513	1174 bp downstream
Tssr152514	transcription start site region 152514	1200 bp downstream
Tssr152515	transcription start site region 152515	1254 bp downstream
Tssr152516	transcription start site region 152516	1367 bp downstream
Tssr152517	transcription start site region 152517	1399 bp downstream
Tssr152518	transcription start site region 152518	1419 bp downstream
Tssr152519	transcription start site region 152519	1477 bp downstream
Tssr152520	transcription start site region 152520	1503 bp downstream