rs257640561 SNP Detail

Summary

• ID
  rs257640561
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138344810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATAGATT CCAGATGAAT
  CAAGAGGCTA ACTGTCAAAA GTGAAAGCAT ATAATTATCA CAAGAATATA AAACTGGACG
  CTTACTTATC TCCTAAGAAA AAATTGGAAA GTTTAATGGA AAATATTTAA TTAAAATTTC
  TACATAGTTT CTTCATGGTT CCTGATGTTG ATCTTGATAT GGGAAAGTCT TTCCCTGAAA
  K
  AGCTATGGTG TCGAAACAAG AAGGGGAGAG ATTTGAATTC ACTTTATGTA TCTTAAGAAG
  ATAATATAGT GCAATTATGG GCAATTTTAC CCTTTCTCTA CAGTGTTTGT CACATTTTGA
  TTACTTATGG ACACATGCAA AGTGGTTAAA ATTACTTGCA ACGATGGAGA CTTGAGTTCA
  GAGCCAAGCA TCCACAAAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320980814	CHEV_3_138302013	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257640561					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138344810 () rs orientation: forward

Symbol	Name	Function Class
Gm65687	predicted gene, 65687	43 bp downstream
Rr586170	regulatory region 586170	373 bp proximal