rs257649598 SNP Detail

Summary

• ID
  rs257649598
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96319931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAACAGTTT TTAAGGCCTA
  CGCTGCAGGT CCTTCAATGC CAAGGTCACG AGTCAACGGG TAGAAATCTC GACATCTCAT
  CCCTTGATCT AGAGCAATGC CCTCGTGGGG CTCCTGGCTG GGGACAGGCA AGGCGGACAG
  CGTTGCCATC AAGCGGCAGG TCGAGCCAGA AGCTACCCTC AGCTCTTCAC AAAGCAGATC
  Y
  AGTCTGCGGC CGCAATCCAA ACACCGAAGG GAATCAGAAC GTACGTCTTT TGTTTGCCGT
  GGCAGGAGAA CTGTTGAGCA GAGGAAAAAA CAAGCTGAGC TTAGCGCTAT CAGCTGCTTC
  CTGGGGCTCG CTCCTTCCTT CCTCCGAGGG GGGTCTGGCC GCTTTGTTCT CGTTCCCAGC
  TGCACTTCTG CGCCTTTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323108990	CHEV_9_96338297	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257649598					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96319931 () rs orientation: forward

Symbol	Name	Function Class
BC043934	cDNA sequence BC043934	within coordinates
Cpgi22163	CpG island 22163	652 bp distal
Cpgi22164	CpG island 22164	within coordinates
Gm50488	predicted gene, 50488	within coordinates
Gm68666	predicted gene, 68666	within coordinates
Rr368835	regulatory region 368835	118 bp upstream
Rr684963	regulatory region 684963	188 bp distal
Rr684964	regulatory region 684964	within coordinates
Rr684965	regulatory region 684965	40 bp distal
Tssr90963	transcription start site region 90963	283 bp downstream