rs257650944 SNP Detail

Summary

• ID
  rs257650944
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40368445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTG TGTTGGACTG AGCTTGCTGG
  A
  GTACAAGTTT AACACTCAAC GACCC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322916255	CHEV_9_40264734	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257650944					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40368445 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	782 bp distal
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676839	regulatory region 676839	1724 bp distal
Rr676840	regulatory region 676840	895 bp distal
Rr676841	regulatory region 676841	1293 bp distal
Rr676842	regulatory region 676842	1532 bp proximal
Rr676843	regulatory region 676843	1903 bp proximal
Tssr84449	transcription start site region 84449	1828 bp downstream
Tssr84450	transcription start site region 84450	1239 bp downstream
Tssr84451	transcription start site region 84451	506 bp upstream
Tssr84452	transcription start site region 84452	534 bp upstream
Tssr84453	transcription start site region 84453	1275 bp upstream
Tssr88934	transcription start site region 88934	1765 bp upstream
Tssr88935	transcription start site region 88935	1714 bp upstream
Tssr88936	transcription start site region 88936	1693 bp upstream
Tssr88937	transcription start site region 88937	1629 bp upstream
Tssr88938	transcription start site region 88938	1372 bp upstream
Tssr88939	transcription start site region 88939	1337 bp upstream
Tssr88940	transcription start site region 88940	1305 bp upstream
Tssr88941	transcription start site region 88941	1016 bp upstream
Tssr88942	transcription start site region 88942	1001 bp upstream
Tssr88943	transcription start site region 88943	973 bp upstream
Tssr88944	transcription start site region 88944	925 bp upstream
Tssr88945	transcription start site region 88945	908 bp upstream
Tssr88946	transcription start site region 88946	812 bp upstream
Tssr88947	transcription start site region 88947	783 bp upstream
Tssr88948	transcription start site region 88948	753 bp upstream
Tssr88949	transcription start site region 88949	323 bp downstream