rs257652394 SNP Detail

Summary

• ID
  rs257652394
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:87844525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATTCTTA AATCAAAACA
  CACAAACATA ATGGAAAATA CAGACTAATG GCAATATATT ACAGTAGTCA CTATGAGTTT
  GCTTGCTACT ATGCTAGGCT TCAAATAAGC CATGAGAAAT GAATACTTCC TCTGAGGTAT
  TTGCAGCATT GTGACGAGAA AATAATAGAC ACATGATAAG TATTTCATGG TAAAGAGATG
  R
  TAAGTATTTC ATGTGATACT CTCAGGTAAA TTTAAGATTT CATTGTATCC TGTTGATTCT
  TATTTATGTA AATGACAACT TTAATAACCA AATATGTCCT TCTGCAAGCC AGCCTAGCTA
  CTATAGAATA GGCATGTCAT TTCTAGTAGT CTTTAGTTGG TACTATAGTT CCTAGGCAAT
  GAGTGTCAAA AGGCACACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365777327	MGP_WTSI_5_88125691	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257652394					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365777327	MGP_WTSI_5_88125691	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87844525 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Csn2	casein beta			Intron
				Noncoding-Transcript-Variant
Tssr46888	transcription start site region 46888			1966 bp downstream
Tssr46889	transcription start site region 46889			1947 bp downstream
Tssr46890	transcription start site region 46890			1914 bp downstream
Tssr46891	transcription start site region 46891			1901 bp downstream
Tssr46892	transcription start site region 46892			1872 bp downstream
Tssr46893	transcription start site region 46893			1846 bp downstream
Tssr46894	transcription start site region 46894			1801 bp downstream
Tssr46895	transcription start site region 46895			1781 bp downstream
Tssr46896	transcription start site region 46896			1702 bp downstream
Tssr51624	transcription start site region 51624			1994 bp upstream
Tssr51625	transcription start site region 51625			1984 bp upstream
Tssr51626	transcription start site region 51626			1972 bp upstream
Tssr51627	transcription start site region 51627			1946 bp upstream
Tssr51628	transcription start site region 51628			1836 bp upstream
Tssr51629	transcription start site region 51629			1742 bp upstream
Tssr51630	transcription start site region 51630			1694 bp upstream
Tssr51631	transcription start site region 51631			1655 bp upstream
Tssr51632	transcription start site region 51632			1396 bp upstream
Tssr51633	transcription start site region 51633			592 bp upstream
Tssr51634	transcription start site region 51634			487 bp upstream
Tssr51635	transcription start site region 51635			473 bp downstream
Tssr51636	transcription start site region 51636			499 bp downstream
Tssr51637	transcription start site region 51637			612 bp downstream
Tssr51638	transcription start site region 51638			1388 bp downstream
Tssr51639	transcription start site region 51639			1395 bp downstream