rs257653300 SNP Detail

Summary

• ID
  rs257653300
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12274497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATGTCTT CCCTGGCACA
  GGAGTGACCA TGGTTCCTCA CCACATGGTG TAGCCACCTG TCTTAGTTAG GGTTTTACTG
  CTGTGAACAG ACACCATGAC CAAGGCAAGT CTTATAAAAA ACAACATTTA ACTGGGCCTG
  GCTTACAGGT TCAGAGGTTC AGTCCATTAT CATCAAAGTG GGAGCATGGC AGTATGCAGG
  Y
  AGGCATGGGG CAGGAGGAGC TGAGAGTTCT ATGTCTTCAT CCAAAGGCTG CTAGTGGAAG
  ACTGACTTCC AGGCAACTAG GGTGAGGATC TTATACCCAC ACCCACAGTG ACACACCCAT
  TCCAAGCAGG TCACACCTAT TCCAAGAAGG CCACACCTTC AGATGGTGCC ACTCCCTGGT
  CCAAGTTATA CAAACCATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss387753845	MGP_WTSI_13_12351878	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs257653300					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387753845	MGP_WTSI_13_12351878	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12274497 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5274	CpG island 5274	1273 bp distal
Gm47021	predicted gene, 47021	182 bp downstream
Mtr	5-methyltetrahydrofolate-homocysteine methyltransferase	1498 bp upstream
Rr270765	regulatory region 270765	1904 bp proximal
Rr281008	regulatory region 281008	1096 bp distal
Rr387989	regulatory region 387989	within coordinates
Rr403567	regulatory region 403567	1280 bp downstream
Tssr121431	transcription start site region 121431	1549 bp upstream
Tssr121432	transcription start site region 121432	1477 bp upstream
Tssr121433	transcription start site region 121433	1426 bp upstream
Tssr121434	transcription start site region 121434	552 bp downstream