rs257653728 SNP Detail

Summary

• ID
  rs257653728
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79490302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTACATGG ACGTACGCAT
  AGGCAAAGCA CCCACACACA GAAAATAAAT TTGTTCTTTT TTTTTTTTTT TTTTTTTTGG
  TTTTTCGAGA CAGGGTTTCT CTGTATAGCT CTGGCTGTCC TGGAACCAGG CTGGCCTCGA
  ACTCAGAAAT CTGCCTGCCT CTGCCTCCCA AGTGCTGGAA TTAAAGGCGT GCACCACCAC
  R
  CCCTGCCAAT AAATTTGTTC TAAATTAAAA GCAAGGCACC ATTCGTGGTG GCACACAACT
  TTAATCTCGG CATTGAGGAA CAGAGACAAG TGGGTGTCTG TGAGTTTGAG GCCAGCCTGT
  TCTACAGAGC AAGGTTCAGG ACAGACGTTC CTCAATTTTA CACCTGAGAA ACTGTCTAGA
  AAGCAAAAGA GTTCTTGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372032925	MGP_WTSI_7_86985440	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257653728					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372032925	MGP_WTSI_7_86985440	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79490302 () rs orientation: forward

Symbol	Name	Function Class
Anpep	alanyl aminopeptidase, membrane	within coordinates
Gm71751	predicted gene, 71751	1865 bp upstream
Tssr67371	transcription start site region 67371	1275 bp upstream
Tssr67372	transcription start site region 67372	1463 bp upstream
Tssr67373	transcription start site region 67373	1923 bp upstream
Tssr67374	transcription start site region 67374	1969 bp upstream
Tssr73155	transcription start site region 73155	1862 bp upstream
Tssr73156	transcription start site region 73156	1798 bp upstream
Tssr73157	transcription start site region 73157	1600 bp upstream
Tssr73158	transcription start site region 73158	1350 bp upstream
Tssr73159	transcription start site region 73159	1300 bp upstream
Tssr73160	transcription start site region 73160	1056 bp upstream
Tssr73161	transcription start site region 73161	349 bp downstream
Tssr73162	transcription start site region 73162	366 bp downstream
Tssr73163	transcription start site region 73163	425 bp downstream
Tssr73164	transcription start site region 73164	570 bp downstream
Tssr73165	transcription start site region 73165	1131 bp downstream
Tssr73166	transcription start site region 73166	1172 bp downstream
Tssr73167	transcription start site region 73167	1380 bp downstream
Tssr73168	transcription start site region 73168	1392 bp downstream
Tssr73169	transcription start site region 73169	1420 bp downstream
Tssr73170	transcription start site region 73170	1451 bp downstream
Tssr73171	transcription start site region 73171	1522 bp downstream
Tssr73172	transcription start site region 73172	1550 bp downstream
Tssr73173	transcription start site region 73173	1566 bp downstream
Tssr73174	transcription start site region 73174	1654 bp downstream
Tssr73175	transcription start site region 73175	1675 bp downstream
Tssr73176	transcription start site region 73176	1733 bp downstream
Tssr73177	transcription start site region 73177	1763 bp downstream
Tssr73178	transcription start site region 73178	1789 bp downstream
Tssr73179	transcription start site region 73179	1853 bp downstream
Tssr73180	transcription start site region 73180	1920 bp downstream