rs257654135 SNP Detail

Summary

• ID
  rs257654135
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91987182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACAGTAAGT AGTTAGTGAG ATCTGAAACC
  CTTTCTACTC TGGAGTCAAA ACTTGGAGAC TCTTCTCAGG CTTAGAGTCA CACTTCTGCC
  CACTGGCTCT AAAAGAAAGA GAGAAAATTA ATACATTAAA GTACTTGGTA GAGGACTGAA
  Y
  TGGGGAAAGC TGGGATGGTT ATAATAATGA ATGGTGTATT CCTTTTCTAC TGGAGATGTT
  TTAAAATATA TGGCTAACAT GGAACCTTAT AGGTAGGGGG TAGCCATGAT AATCACAGTC
  TTCATGATAT CCAGTCTTCC TGGCCACTGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319842245	CHEV_1_93956037	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257654135					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91987182 () rs orientation: forward

Symbol	Name	Function Class
Hdac4	histone deacetylase 4	within coordinates
Rr18400	regulatory region 18400	1219 bp proximal
Rr23700	regulatory region 23700	within coordinates
Rr35319	regulatory region 35319	620 bp proximal
Rr366965	regulatory region 366965	521 bp downstream
Tssr8116	transcription start site region 8116	512 bp downstream
Tssr8117	transcription start site region 8117	483 bp downstream