rs257657075 SNP Detail

Summary

• ID
  rs257657075
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:30671573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCACTC TCCCTCCCTC
  CCTCCCTCCC ACTCTCCCTC CCTCCCTCCC TCCCTCCCTC CCTCCCTCCC TTTCTCTGTC
  TCTACTATCC TCTCCCCTCT CCTCTCCATG CCCTGAATAA ACTCTATTCT ATACTATACC
  ATCGTGTGGC TAGTCCCTGG GGGAGGGAGG GGACAGGGAT GCCTCAGCAT GGGCCTGTGG
  R
  GACACCCCCT TCCCTCATGC CTGATTACAC TCCACCAAAA CATATTCTCT CTATCTTTTT
  ATAAACACAA CACATAGGGT TCTAATTTTT CCATATCCCT TGGTTTATAT CTTAATATAT
  TTGAGTGACT TCATCTGCCA AGATGCTCTT GTTACACATT TAAGATCAGC ACATTTCTTC
  GGAATGCCAA TTTCTTCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390693715	MGP_WTSI_14_31762802	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257657075					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390693715	MGP_WTSI_14_31762802	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:30671573 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6278	CpG island 6278	1429 bp proximal
Gm41121	predicted gene, 41121	999 bp downstream
Nek4	NIMA (never in mitosis gene a)-related expressed kinase 4	1761 bp upstream
Rr404045	regulatory region 404045	1557 bp upstream
Rr489933	regulatory region 489933	1118 bp proximal
Rr489934	regulatory region 489934	1657 bp proximal
Rr489935	regulatory region 489935	1816 bp proximal
Tssr124896	transcription start site region 124896	1790 bp upstream
Tssr124897	transcription start site region 124897	1815 bp upstream
Tssr124898	transcription start site region 124898	1836 bp upstream
Tssr124899	transcription start site region 124899	1871 bp upstream
Tssr124900	transcription start site region 124900	1915 bp upstream
Tssr127906	transcription start site region 127906	1639 bp downstream