rs257658085 SNP Detail

Summary

• ID
  rs257658085
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30253149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCCCAGG TGCCAGGCCT
  AGGGAGAGGG CCAATCCAAC TACTAACAAG ACTGGGGGCC AGGAGGGGGG TCTAACCCCG
  GGCCGGGGGT GCGGGAATGT CTGTTGATTT TTAACTTAGA GGAGAATGTC ACCCCTCAGT
  GGGGCCATTG GGTGTCCCTT GAGTGCGGTA TTCTGAGCCC CTCCCCCCCC CCCCCCCCGT
  W
  ACTGATCTTC TGAGGGGGTG AAGGGTGGGG CAAGTGAGCC GGGAATCTGG GGGAAAGGAC
  AAGTGAGTCC CGACGGGCTG TAATGTTCCT AGGGTTGCAT ATGGTGATGC TGCATCTTCA
  AGAGGGATCC TGTGATTTGA TGAAGGGGGT CTTGGGCACT CTAAACGAGG GGAAAGTACC
  CGTAAAGGGC ACAGGAGGTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370910094	MGP_WTSI_7_31338743	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	T	T	T	A	A	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257658085					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	T	T	T	A	A	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370910094	MGP_WTSI_7_31338743	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30253149 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18808	CpG island 18808	1073 bp distal
Cpgi18809	CpG island 18809	190 bp distal
Cpgi18810	CpG island 18810	502 bp proximal
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Lin37	lin-37 DREAM MuvB core complex component	1717 bp downstream
Mir9769	microRNA 9769	820 bp downstream
Proser3	proline and serine rich 3	1425 bp upstream
Rr400242	regulatory region 400242	1232 bp downstream
Tssr65779	transcription start site region 65779	1160 bp downstream
Tssr65780	transcription start site region 65780	452 bp downstream
Tssr65781	transcription start site region 65781	415 bp downstream
Tssr65782	transcription start site region 65782	1048 bp upstream
Tssr65783	transcription start site region 65783	1123 bp upstream
Tssr65784	transcription start site region 65784	1147 bp upstream
Tssr65785	transcription start site region 65785	1199 bp upstream
Tssr65786	transcription start site region 65786	1217 bp upstream
Tssr65787	transcription start site region 65787	1311 bp upstream
Tssr71787	transcription start site region 71787	1408 bp upstream
Tssr71788	transcription start site region 71788	1349 bp upstream
Tssr71789	transcription start site region 71789	941 bp downstream
Tssr71790	transcription start site region 71790	1053 bp downstream