rs257661154 SNP Detail

Summary

• ID
  rs257661154
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:9883139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCCAAGC TCCGCAGCAC
  ACCTCCGACA GCCAGGCTCG CAGGAGCCCA GGACTGACTA AGCAATTAAA ACTTGGGGAC
  AAGTCCTCCC TGGAGGACAC CGGCCCCAGG ATCTTTCCAA CCACTACAAA TCCTCCAAAA
  GGAGAAAGCT GAGCTTTTAG TTTACAAAAA ACCAAACAAA CAAACCCCCA AACACACACA
  M
  ACAAACAGTC CCTCCAAGAG GAGGGAGTGA TATCAAACTT AAAAAAAAAA AAAAAGTCAC
  AAGTCACAAT ACCAACCTGA GTAGCAAGGA GCGTAGAGGA GGAGGAGGAG GCGTGTGACC
  TGCCCGGTCA GATTGCGTAG CTCTCTATGT CTCGCTCTCT CAGTCTCTCT CTCTTTCTCC
  TCTCCCTCTC TCAGTATTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353056031	MGP_WTSI_2_9799955	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257661154					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353056031	MGP_WTSI_2_9799955	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:9883139 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11183	CpG island 11183			610 bp distal
Cpgi11184	CpG island 11184			within coordinates
Gata3	GATA binding protein 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Gm13256	predicted gene 13256			within coordinates
Rr551592	regulatory region 551592			1062 bp distal
Rr551593	regulatory region 551593			262 bp proximal
Rr551594	regulatory region 551594			1431 bp proximal
Rr551595	regulatory region 551595			1763 bp proximal
Tssr16062	transcription start site region 16062			1419 bp upstream
Tssr22554	transcription start site region 22554			869 bp upstream
Tssr22555	transcription start site region 22555			478 bp upstream
Tssr22556	transcription start site region 22556			441 bp upstream
Tssr22557	transcription start site region 22557			312 bp upstream
Tssr22558	transcription start site region 22558			134 bp upstream
Tssr22559	transcription start site region 22559			32 bp downstream
Tssr22560	transcription start site region 22560			110 bp downstream
Tssr22561	transcription start site region 22561			139 bp downstream
Tssr22562	transcription start site region 22562			252 bp downstream
Tssr22563	transcription start site region 22563			1209 bp downstream
Tssr22564	transcription start site region 22564			1235 bp downstream
Tssr22565	transcription start site region 22565			1261 bp downstream