rs257664119 SNP Detail

Summary

• ID
  rs257664119
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:45006166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTCTGAG GCTCCTCACG
  CAGCAAAACA AGTCCAGCGA AGGAGGACTA GCTCCTTTTT TGGACTGTTT TCCCGTTAAT
  AATCCACTTC GAGATTAGCG CAGGCGAAGG GGATTAAAAC AACAGATACA TGCAAATGTG
  AAATAATATT GACATCGACA TTGGAGGGGA AATAATTCTT GAGGCTTTCC TTGGATAAAG
  Y
  CAACTGCTCC TCTTAGGACT CCCCCCCCAA GCCCCCCACC CCCGGCAGGG TGAGGAGGAC
  ACCCTTTTGT TTTCCAATTC CCGGCAGCCA GACCCGGAGC CTGTCCCCCC ATTCACCTCT
  CAGTCTGTCA ATTTCCTTAA CTTTCACAGC CGCTCCCCAC CCCCACTCCT GCTGGCCCAG
  AGGCCCGAAG AGGTTCTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353808080	MGP_WTSI_2_44971674	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257664119					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353808080	MGP_WTSI_2_44971674	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:45006166 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11634	CpG island 11634	520 bp proximal
Rr373117	regulatory region 373117	within coordinates
Rr556443	regulatory region 556443	1146 bp distal
Rr556444	regulatory region 556444	within coordinates
Rr556445	regulatory region 556445	1231 bp proximal
Tssr17636	transcription start site region 17636	1077 bp upstream
Tssr23988	transcription start site region 23988	810 bp downstream
Tssr23989	transcription start site region 23989	1147 bp downstream
Tssr23990	transcription start site region 23990	1195 bp downstream
Tssr23991	transcription start site region 23991	1246 bp downstream
Tssr23992	transcription start site region 23992	1272 bp downstream
Tssr23993	transcription start site region 23993	1369 bp downstream
Zeb2	zinc finger E-box binding homeobox 2	Intron