rs257666912 SNP Detail

Summary

• ID
  rs257666912
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:73143231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTCGGGA TTTGTTTAAG
  GCAATTCGTG TAAGCCAAGA GAAAGTGGCC TGATGGGATG GTAAAACGGG CATTTCAACC
  TAGGTAGCCC TTTAACCTCA ATACCAGCGT TGACTAGAAA ACAGCCTCTT GTTTTCGCTT
  CTTCTAGGCT TCCTTGGCTA TCAGGAAGCT ATGGCCTCAG CCGCCAGCAG GTGACGCCGA
  Y
  GACGGGCAAT GAGTCCCAGC TGCCGCAATT ACCAAGGCTG AGGCGTCTCC TTTAAGAAGC
  TGACTCACGT GGATGCTGTG TTGTGTGCGC TCAGCTGGGA GTGGGGGGCG GGTCCTCACT
  CTCACTACAT TGGCCGCCTC GGCCGAGGAG GCAGACTTAG CCTCCTTGAT TGGCCGTAAG
  GATGCAAGGT GTCGAATTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398976822	MGP_WTSI_17_73185576	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257666912					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398976822	MGP_WTSI_17_73185576	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:73143231 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9486	CpG island 9486	within coordinates
Rr335920	regulatory region 335920	1231 bp distal
Rr340175	regulatory region 340175	within coordinates
Rr405431	regulatory region 405431	19 bp upstream
Tssr5197	transcription start site region 5197	81 bp upstream
Tssr145775	transcription start site region 145775	420 bp upstream
Tssr145776	transcription start site region 145776	442 bp upstream
Tssr145777	transcription start site region 145777	488 bp upstream
Tssr145778	transcription start site region 145778	1317 bp upstream
Tssr145779	transcription start site region 145779	1388 bp upstream
Tssr145780	transcription start site region 145780	1808 bp upstream
Tssr149306	transcription start site region 149306	1233 bp downstream
Ypel5	yippee like 5	392 bp upstream