rs257678155 SNP Detail

Summary

• ID
  rs257678155
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:93872776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTT CCTTTCTTCC TCCCCCCCCC
  M
  CCCCCCTCGT ACCTGGACTG TGTAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss642579396	FVB_NJ_10_93499659	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs257678155					SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss642579396	FVB_NJ_10_93499659	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:93872776 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2121	CpG island 2121	126 bp distal
Fgd6	FYVE, RhoGEF and PH domain containing 6	within coordinates
Gm49628	predicted gene, 49628	1113 bp upstream
Rr402165	regulatory region 402165	898 bp downstream
Tssr3327	transcription start site region 3327	539 bp downstream
Tssr95293	transcription start site region 95293	1443 bp downstream
Tssr95294	transcription start site region 95294	859 bp downstream
Tssr95295	transcription start site region 95295	793 bp downstream
Tssr95296	transcription start site region 95296	32 bp upstream
Tssr98985	transcription start site region 98985	1145 bp upstream
Tssr98986	transcription start site region 98986	1127 bp upstream
Tssr98987	transcription start site region 98987	1098 bp upstream
Tssr98988	transcription start site region 98988	165 bp upstream
Vezt	vezatin, adherens junctions transmembrane protein	1115 bp upstream