rs257679567 SNP Detail

Summary

• ID
  rs257679567
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5773829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCAATAT TTCTGTAATG
  TGTTATGCCT TTTAAAAAAC ACAACATGAT ATCTGACATA ATTATATCAG TGTGTTAATA
  TTTTCGGTTT TTCTCAACTT AAATTTGCTG ATGATCCTTT GGCTACCTGA CGTCATGAGA
  CCTTCTTTGT TTAAAAGGAA GAACAGTGAT TCATCCCATT AACTCAGAAT ATAAAATTTT
  S
  AGATTAAAAA TTATGATTTT ATACAGCAGC AGAGCCACCT TCTCTTCATA GTTAAACCCA
  TACTTACCTC CTTGAGATAC CACAATTAAA GGAGTTCACA CATAGCAGTC TAATAATAAA
  ACACTGGTAT TTCCTACAAA GAGCAATAGG CACAATACTA GTCTCTTTGC TTCATAATCT
  GAGATTTAAC AGGACTTGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324223062	CHEV_13_5723076	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257679567					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5773829 () rs orientation: forward

Symbol	Name	Function Class
Gm35330	predicted gene, 35330	within coordinates
Gm57599	predicted gene, 57599	1642 bp upstream
Rr387902	regulatory region 387902	21 bp upstream
Rr474521	regulatory region 474521	321 bp distal
Rr474522	regulatory region 474522	592 bp proximal
Tssr121308	transcription start site region 121308	609 bp downstream