rs257681755 SNP Detail

Summary

• ID
  rs257681755
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127125165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACCCCTCC CCCACAACCC
  CCCATTAATC CCCAAGAGAA CAAACACCCC ACGCGGCCCC CCCCCACCCG CCCTCCGCGG
  AAGGATCTGG GCCTCTTCCC AGGCCACTGG TGGCCAATCC CAGTCCTCCC TCGGGAGGGG
  CCCCTTCCGA AGCCACAATC TGTTGGGGGA GTCAGGAATG TCAGGTCCGG GAGGGGCCAG
  M
  CCTAAAAGAT GAAAGTCGCG ACTTGCCCTG CCCCGCCCCA AAGGCTTCCC GGGTAGTGTG
  CAGAGACTTG ACCCGCCTCT CCAGGTCAAC ATGTCACAAC ACGACCTCAG CCTGTCAAGT
  CACATGACCT CTGCCTGTCA CTGACAACCT GGTCTGTCTT TAGGCCAGGA GAGACCATCT
  GGTCCAACCC ACCCCCCACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382182448	MGP_WTSI_10_126726352	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257681755					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382182448	MGP_WTSI_10_126726352	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127125165 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2349	CpG island 2349	within coordinates
Cpgi2350	CpG island 2350	1029 bp proximal
Ddit3	DNA-damage inducible transcript 3	1497 bp upstream
Gm4189	predicted gene 4189	397 bp downstream
Gm20492	predicted gene 20492	within coordinates
Gm66222	predicted gene, 66222	713 bp upstream
Mbd6	methyl-CpG binding domain protein 6	278 bp upstream
Rr369092	regulatory region 369092	1172 bp upstream
Rr402323	regulatory region 402323	within coordinates
Rr440863	regulatory region 440863	801 bp distal
Rr440864	regulatory region 440864	417 bp distal
Rr440865	regulatory region 440865	130 bp distal
Rr440866	regulatory region 440866	223 bp proximal
Rr440867	regulatory region 440867	988 bp proximal
Rr440868	regulatory region 440868	1323 bp proximal
Tssr3392	transcription start site region 3392	345 bp downstream
Tssr96176	transcription start site region 96176	1211 bp downstream
Tssr96177	transcription start site region 96177	775 bp downstream
Tssr96178	transcription start site region 96178	745 bp downstream
Tssr96179	transcription start site region 96179	707 bp upstream
Tssr96180	transcription start site region 96180	1490 bp upstream
Tssr99755	transcription start site region 99755	866 bp upstream
Tssr99756	transcription start site region 99756	836 bp upstream
Tssr99757	transcription start site region 99757	663 bp upstream
Tssr99758	transcription start site region 99758	522 bp upstream
Tssr99759	transcription start site region 99759	450 bp upstream
Tssr99760	transcription start site region 99760	378 bp upstream
Tssr99761	transcription start site region 99761	299 bp upstream
Tssr99762	transcription start site region 99762	261 bp upstream
Tssr99763	transcription start site region 99763	229 bp upstream
Tssr99764	transcription start site region 99764	1042 bp downstream