rs257681846 SNP Detail

Summary

• ID
  rs257681846
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67199543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGAAGTAA GCTCACTGGT AAAGTTTAAG
  AATAATCTTT CAGGGTCATA TATTAGAGCC AAGAGAAATT AGAAATAGCA GTATTTCCAA
  CTGGAAGGTG CATCCAACTT CTCCACTCAA GTTTTGTTCA GCTAGAATTT GATTCACATG
  W
  ATGGTATGCA AATAAAGAAC CAAACACTTG ATACTCTCAG AAGGCAGTAT GAGACATGCT
  TATTGACTGA AGAAAACATC TCATCTTCTA GGACTTGTGA ATAGAACCCA GACGGCCTCC
  AAAGGTTTAg tgtgtgtgtg tgtgtgtgtg                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319761959	CHEV_1_67206958	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257681846					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67199543 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Tssr7209	transcription start site region 7209	991 bp downstream
Tssr7210	transcription start site region 7210	952 bp downstream
Tssr7211	transcription start site region 7211	913 bp downstream
Tssr7212	transcription start site region 7212	507 bp upstream