rs257687522 SNP Detail

Summary

• ID
  rs257687522
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106479000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAAGTGAG GAAGAGTCCA
  AGGTCCAGAC ATTCCGGAAA GCCTAGTCTA CAGGGGACTC TGCTTTATCA CACAGGGCAC
  CCCAGTTCAA CCTGCACACT AGAAGCCAGG TGGGCCCCTG AGGGAGACAG CATAGAGCAA
  GAAGACAGCA GTCTCAGAGC AGGGAGCAGG ACCGGCTGGA CACTGATCCA GATGAGTGAA
  R
  CCCAGGCATA CCCAGGGCAG GCATTCATTG GTTTTACCTA GGTATCTCCT GGTCCCTCAC
  AGGGAACTGC GTCCTGTCAC AGAGGAGGAA AGCGGAAGTA TAAGGGGTAG TGCTTTTTAT
  TAGGGATGGA GAAACAGAAG TAGAACCTAG CACCTAGGCA CCTTAGTTTT TGCTGTTTGG
  GCCCCTGCTG AGCAGAGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321246847	CHEV_4_106294408	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257687522					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106479000 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14527	CpG island 14527	580 bp proximal
Rr596780	regulatory region 596780	139 bp proximal
Tssr38185	transcription start site region 38185	621 bp upstream
Tssr38186	transcription start site region 38186	683 bp upstream
Tssr38187	transcription start site region 38187	725 bp upstream
Ttc22	tetratricopeptide repeat domain 22	646 bp upstream