rs257689088 SNP Detail

Summary

• ID
  rs257689088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:53881916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAAGGTG AGGCATTGGT
  TCTATCAGAT TGGCCTACGG GTGTGGCTGT AGAACATTTT CTTGATTGGT AATTGATGCA
  AGGCACACAA TTCCATCATT GTTTTAGTGA TGTCTGAGGG GGTTCAAATG GAACCCTTTC
  AGATAGCTTT TGACTTATTG TCCCATCATA CTCAAACTCA AAAATACCTG TTCTTGTTTG
  Y
  TTGTTTGTTT TTTATGAGTC TGTTCAAATT TTCCAGTTTG AGTTTCTGAA GTTTTATTTT
  CTCATTAAAA CAGAAGGTCC ACAAGGGCTG TTTTGTACTC CAAGCAGAGT CTGACACAGT
  CTGTTGAAGA GATAGGTGAC TTCTCCCACC GTTGCGTGAC AGTTTCAGAT GAAATGTTCC
  ATTCTGCAGG GAAGTGGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323306465	CHEV_10_53725626	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257689088					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:53881916 () rs orientation: forward

Symbol	Name	Function Class
A030011A13Rik	RIKEN cDNA A030011A13 gene	1187 bp downstream
Man1a	mannosidase 1, alpha	within coordinates
Rr401891	regulatory region 401891	123 bp upstream
Rr431501	regulatory region 431501	within coordinates