rs257705459 SNP Detail

Summary

• ID
  rs257705459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55907593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTACGCCA TTCCAAACAA
  AACAAAACCA GGAAGGACTT AATTGTGAAG AAGAAAGTGG TATAGATAGG CAAGAAATCA
  GCAATACAGA GAAACAGCTG AAAAATGAAT AATGTCCAAA GAACATTCAC AGTGTGTGTG
  TGTGTGTGTG TGTGTATGTG TGTGTGCAAG AAAGAGATGG ACAAAGGGAT TAATATTAGA
  Y
  AGAAGTGGGG CTAAAGAGAT GCCTCAGTGG TTAAGAGCAC TCTTTCCAAG GAGCTGGATT
  TGGATCCCAG AACTCACATG GTGGCTCACA ACTACCTGTA ATTCCAGTTC CAGGGAATCT
  AGTGGCCTCC TTGGGCACCA CCAGGCACAC AGGTGCCAAG ACATATAAGC ACGGACAGCA
  CCCATACACA CACATATACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391161546	MGP_WTSI_14_56288973	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	C	T	T	T	C	T	C	T	T	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257705459					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	C	T	T	T	C	T	C	T	T	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391161546	MGP_WTSI_14_56288973	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55907593 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6505	CpG island 6505	1500 bp proximal
Gmpr2	guanosine monophosphate reductase 2	1805 bp upstream
Nedd8	neural precursor cell expressed, developmentally down-regulated gene 8	within coordinates
Rr492562	regulatory region 492562	983 bp proximal
Rr492563	regulatory region 492563	1898 bp proximal
Rr492564	regulatory region 492564	1978 bp proximal
Tssr125802	transcription start site region 125802	1015 bp upstream
Tssr128855	transcription start site region 128855	1722 bp downstream
Tssr128856	transcription start site region 128856	1737 bp downstream
Tssr128857	transcription start site region 128857	1928 bp downstream
Tssr128858	transcription start site region 128858	2000 bp downstream