rs257714913 SNP Detail

Summary

• ID
  rs257714913
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105289392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCCTTAG GCCCTCCCCA
  GCAGGCCTTG GTTGAAGCAG TTAGTGAATG TTCCTGGTGT CAGGTGAAAG GCTCTCTTTC
  CCAGGACACG GGCAATCCCT TCCAAAGTCA GCTGAAGCCT CCCAGATGTG AGGGGCTCCC
  CCCACCCCCA TACACCTGGG CATCAGGTGT GTCCTCATCC TTGCCAAGGG CTCAGGGCAT
  Y
  TTGCCCTCAG TACAGGTTCG TGCGTTCAAC TTCCCTTCGT CCAAGTATGT CCTTCTCACC
  TGGGCCGGGC CGCTCTTCCC CTCAGGGCGC GAGGCCCGGA CCGCGCGGGG ACCTCGGGTT
  CCAGTTCTCG TCGCGATCCT AGCAGCAGGT CAGAGATTTG GCGGAAGTGA CATGCTCTCT
  GGGCAGAAGA AGCCGGCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322370119	CHEV_7_112788699	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257714913					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105289392 () rs orientation: forward

Symbol	Name	Function Class
Arfip2	ARF interacting protein 2	within coordinates
Cpgi19541	CpG island 19541	within coordinates
Gm45799	predicted gene 45799	367 bp upstream
Rr400513	regulatory region 400513	63 bp upstream
Rr652793	regulatory region 652793	119 bp distal
Rr652794	regulatory region 652794	within coordinates
Rr652795	regulatory region 652795	121 bp proximal
Timm10b	translocase of inner mitochondrial membrane 10B	within coordinates
Tssr2358	transcription start site region 2358	231 bp upstream
Tssr68382	transcription start site region 68382	278 bp upstream
Tssr68383	transcription start site region 68383	337 bp upstream
Tssr68384	transcription start site region 68384	598 bp upstream
Tssr68385	transcription start site region 68385	811 bp upstream
Tssr68386	transcription start site region 68386	867 bp upstream
Tssr74083	transcription start site region 74083	132 bp downstream