rs257717234 SNP Detail

Summary

• ID
  rs257717234
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:135398477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTAACCTA CGGGCCTGGG
  AAATGACTCA ACAGAGTGGT CGTTGGGATC TTTAGCATTC CTGCAGGTGG GGGTATCTGT
  AACCTCAGCG GACAGTTGGA CCTGGAACTC ATTGGATAAC TAACAAAGCC AAGCGCTGAG
  TGACAGAAAG TGACAAACAC AGACCTCTGT GAGAGAGAGT GGGGGTGGGG GGGACAGAGG
  R
  AGGGGGAGGG GGAGAGGGCA AGAACTGTGT CCTTGTTACT ATTTAGCACA TTGCTATATA
  GTATATAAAA TGATTCTTTT CCCTGATGAT ATAAATACAA AGCCTGAAAG CTCTGGTGAA
  ACAACAAAGT ATAAAGTGTT TGTCTTTCCT CTGAGGACTA GGTGGGATGG GGAAAACTCT
  ACAGTCTGCA AGGTGGGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359841243	MGP_WTSI_3_135355680	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257717234					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359841243	MGP_WTSI_3_135355680	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135398477 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13858	CpG island 13858	736 bp distal
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	1169 bp upstream
Rr585767	regulatory region 585767	680 bp distal
Rr585768	regulatory region 585768	314 bp proximal
Tssr35825	transcription start site region 35825	1460 bp upstream
Tssr35826	transcription start site region 35826	1445 bp upstream
Tssr35827	transcription start site region 35827	1403 bp upstream
Tssr35828	transcription start site region 35828	1346 bp upstream
Tssr35829	transcription start site region 35829	1309 bp upstream
Tssr35830	transcription start site region 35830	1299 bp upstream
Tssr35831	transcription start site region 35831	1237 bp upstream
Tssr35832	transcription start site region 35832	1205 bp upstream
Tssr35833	transcription start site region 35833	1152 bp upstream
Tssr35834	transcription start site region 35834	735 bp upstream