rs257721625 SNP Detail

Summary

• ID
  rs257721625
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107564607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTACCCACT GCCCATGGTG AGATCTAAGA
  CCCAGCTAAC ATTGGCCAAA GAAGGACAAG GGTGGGAGAG GTTCCAGCCA TCACCAGGCT
  TGTGAAGGGA CAAAGGCTGG CCTGGCAGGT AGGGGGCAGT CCTAAGGGAA AACGCAGAAC
  R
  CCTGCTGGCC ATTGATACTT TGGTTTGCCT GATGCCCTCA CTGCAGGGTC CCACCCCATC
  CATACTGGCT GTTTAGTAAG GATTAGTTCA GGGCTTCCCC CTGAAGGCAC TGTGTATGCT
  AACACAGTGG CAGAGCCAAG GGCATAGCAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321250228	CHEV_4_107380015	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257721625					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107564607 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
Gm57502	predicted gene, 57502	within coordinates
Gm70287	predicted gene, 70287	within coordinates
Tssr38261	transcription start site region 38261	362 bp downstream
Tssr38262	transcription start site region 38262	348 bp downstream
Tssr38263	transcription start site region 38263	338 bp downstream
Tssr38264	transcription start site region 38264	331 bp downstream
Tssr38265	transcription start site region 38265	311 bp downstream