rs257721991 SNP Detail

Summary

• ID
  rs257721991
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:94880514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTCTACA GAGGCCCGGC
  AGTCACTGCA GTACCATGGA TGCTGAGTCA GACCTGATGT GGCAGTATGA AGGGAGAGCC
  ACCTGTCCTG GGCAAAGCCT GATGACTGTC CAGCCTCCCA TACTGCTTTC CTCTGCCCTT
  TGATGGAGAC AGATGCCGAC ATCAGACTGG GCACATATGT GCGCCCGCGC ACACACACAC
  M
  CATTTTATCT ACAGGCTGCT GCTCCTGCTG CCCTGCCGGA TGTGAGAAGT GTGCCAAGGA
  CTGTGTGTGC AAAGGTGAAG AGGGGGCCAA GGCAGAGGCC GAGAAATGCA GCTGCTGCCA
  GTGAGGACCC AGACCCTCCC ACACAGCCTA TGTAAATAGT GCTGGGTGTC CCTGGTGGGG
  CACAACTGTT GTCTTCCCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375635819	MGP_WTSI_8_96677786	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257721991					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375635819	MGP_WTSI_8_96677786	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:94880514 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20837	CpG island 20837	960 bp distal
D8Jpk2	DNA segment, Chr 8, Japan, Kominami 2	1795 bp proximal
Mt3	metallothionein 3	within coordinates
Rr187118	regulatory region 187118	within coordinates
Tssr78818	transcription start site region 78818	1135 bp downstream
Tssr78819	transcription start site region 78819	882 bp downstream
Tssr78820	transcription start site region 78820	853 bp downstream
Tssr78821	transcription start site region 78821	9 bp upstream
Tssr82483	transcription start site region 82483	65 bp downstream
Tssr82484	transcription start site region 82484	120 bp downstream
Tssr82485	transcription start site region 82485	258 bp downstream