rs257722675 SNP Detail

Summary

• ID
  rs257722675
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24913421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTCCAGCC GTCACGCCAA CGCTCATCTA
  CTCTCGAGCA GTCAAAATCA GGCTTGCCCA GCTTCCGATT CACCTCATTG TGCAGGCGGC
  ACAGCCACTG GCTGAAGGAT ACTCGAGTGC TTGTGTCTGG CTGGTTCCTG CCTATCCTTT
  R
  AGAGAAGCAC AGAAGGATGT AAGGAGATCC CGGCCCCTCT GTCTCTGCCA GTGTCTGGAG
  ACGGGAGTTG GGGCACTGCT ATGACCTATC TTCCTGTAGG GGGATGGGGG GGGCCTGAAT
  CTAGAGTTTC TAGGTAGGGC CTGGCACAAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325333061	CHEV_17_24831392	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257722675					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24913421 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8739	CpG island 8739	1157 bp proximal
Gfer	growth factor, augmenter of liver regeneration	within coordinates
Noxo1	NADPH oxidase organizer 1	1787 bp upstream
Rr523392	regulatory region 523392	1249 bp proximal
Rr523393	regulatory region 523393	1611 bp proximal
Tssr143060	transcription start site region 143060	1829 bp upstream
Tssr146764	transcription start site region 146764	1540 bp downstream
Tssr146765	transcription start site region 146765	1618 bp downstream
Tssr146766	transcription start site region 146766	1674 bp downstream
Tssr146767	transcription start site region 146767	1700 bp downstream
Tssr146768	transcription start site region 146768	1750 bp downstream