rs257722864 SNP Detail

Summary

• ID
  rs257722864
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3074541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCTATTC ATTTTTTATT
  GAAGTTAGTT TTGGTTTTTC CCAGACTTGG TGTCTCCCGG CTTAACCCTG AGACGGTTGC
  CCTGGCGTGC CACCCGGTGG TGACAGGTTG TCACTGCAAC GTTCCAATTT TTTTTTTTTT
  TTTTGGTTTT TTTCAAGACG GTATTTTTTT TCTAATTATT TTTTTATTTT AATTTTTGAA
  T
  GTTTAAATTT TATTTATTTA TTTATCTATT TATTTCTTTA TTGAATTTAA TTTTGGTTTT
  TCCCAGACTT GGTGTCTCTG GGCTTAACCC TGAGACAGAT GCTTTGGCGC ACCACCCGGT
  GGCGACAGGT TGTCACTGCA AAGCTCCCCT TTTTGTGTGT GTTTGTTTGT TTTTCTTTTT
  TTCCGAGACA GGGTTTTTCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382236874	MGP_WTSI_11_3024544	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257722864					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382236874	MGP_WTSI_11_3024544	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3074541 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2431	CpG island 2431	405 bp distal
Gm74511	predicted gene, 74511	within coordinates
Pisd-ps1	phosphatidylserine decarboxylase, pseudogene 1	1465 bp upstream
Rr369110	regulatory region 369110	533 bp downstream
Rr441449	regulatory region 441449	1797 bp distal
Rr441450	regulatory region 441450	510 bp distal
Rr441451	regulatory region 441451	1194 bp distal
Rr441452	regulatory region 441452	1035 bp distal
Rr441453	regulatory region 441453	79 bp distal
Rr441454	regulatory region 441454	96 bp distal
Rr441455	regulatory region 441455	106 bp proximal
Rr441456	regulatory region 441456	922 bp proximal
Tssr100004	transcription start site region 100004	510 bp downstream
Tssr100005	transcription start site region 100005	487 bp downstream
Tssr106442	transcription start site region 106442	621 bp upstream