rs257733650 SNP Detail

Summary

• ID
  rs257733650
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69490884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACCTGGA TACCCAAAGG
  GAAGAGACAC AGATCCAGCG GGAGGAAAGA GGGAAGGAGC CACTTGAGGG TGGGACGTGG
  GGGCTGCGGT GAAGAGGAGA TTGGAAAGGA TTAAAGAGAA GCAGAGAGAC TAGAGGAATA
  TGCTGCTCTG ATGGACGAAA ACTTGGAGCA GGGGGCTCTT TCGCAACATT CTAGGGATGT
  Y
  ATAGGGTTGT TTGTTTGTTT GTTTGTTTTT TAAAGGCAAA AGAGTTTGAA GGAGGCGGAG
  CAAAGAAACT CAGAGCTGAG CTGGAGGAGG GTGTCTGACG CTTTCAGGCT GGCATGCAGA
  AAGGGAAGAC CTTAGTGACC AGTTAGCAAC TTGCAAGGAG TAGCCAGAGA GAGGATGGGG
  GTGGGTAGAT CTGGGCTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383787290	MGP_WTSI_11_69413560	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257733650					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383787290	MGP_WTSI_11_69413560	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69490884 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	within coordinates
Gm72066	predicted gene, 72066	within coordinates
Rr386229	regulatory region 386229	within coordinates
Rr450033	regulatory region 450033	319 bp distal
Rr450034	regulatory region 450034	448 bp distal
Rr450035	regulatory region 450035	within coordinates
Tssr3544	transcription start site region 3544	637 bp downstream
Tssr102487	transcription start site region 102487	18 bp downstream
Tssr102488	transcription start site region 102488	1105 bp upstream
Tssr102489	transcription start site region 102489	1180 bp upstream
Tssr108712	transcription start site region 108712	40 bp upstream
Tssr108713	transcription start site region 108713	94 bp downstream
Tssr108714	transcription start site region 108714	176 bp downstream
Tssr108715	transcription start site region 108715	189 bp downstream
Tssr108716	transcription start site region 108716	501 bp downstream
Tssr108717	transcription start site region 108717	526 bp downstream
Tssr108718	transcription start site region 108718	585 bp downstream
Tssr108719	transcription start site region 108719	596 bp downstream
Tssr108720	transcription start site region 108720	600 bp downstream
Tssr108721	transcription start site region 108721	614 bp downstream
Tssr108722	transcription start site region 108722	695 bp downstream
Tssr108723	transcription start site region 108723	723 bp downstream
Tssr108724	transcription start site region 108724	776 bp downstream
Tssr108725	transcription start site region 108725	800 bp downstream
Tssr108726	transcription start site region 108726	895 bp downstream
Tssr108727	transcription start site region 108727	917 bp downstream
Tssr108728	transcription start site region 108728	961 bp downstream
Tssr108729	transcription start site region 108729	1048 bp downstream
Tssr108730	transcription start site region 108730	1080 bp downstream
Tssr108731	transcription start site region 108731	1111 bp downstream
Tssr108732	transcription start site region 108732	1172 bp downstream