rs257733792 SNP Detail

Summary

• ID
  rs257733792
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:83534504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGAGGTA AACACTGTTA
  TCTCTGGGTT ACAGGCTGGG AAACTGGTGG CCCAGATGGC TCCCCGCCCT GTAACGAGGA
  ATTAAACGGA GGACCTTGAG CTACTGTACT TTTTATTTAT TAATTTAACT GTGCAGACAG
  GCTTTGAACT TCTGGCGATC CTCCTTCAGG GTCTGTAGTT GGTGATTGTA GGCCTGTGCC
  R
  TAGGGCTTTG TGGCCAGGTG GACTAAGTGA CTCCCTAGGC TCTTAACAAC AGCAGTGGCT
  AAAAGAGAAG GTCCCCTAAA CCCACTGGCC ACACCCACTC CCTTTCTTTG TGCAGACCTT
  GTCTGCCAGA AACTCCTGGA ACACCTGGGC CTCCTCCCAG TAAAGCACTC TCTCAAGAGC
  CCTGAAGTCT TCTGCTGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322294679	CHEV_7_91033806	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257733792					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:83534504 () rs orientation: forward

Symbol	Name	Function Class
2310034P14Rik	RIKEN cDNA 2310034P14 gene	103 bp downstream
Cpgi19376	CpG island 19376	475 bp distal
Mesd	mesoderm development LRP chaperone	within coordinates
Rr158447	regulatory region 158447	1297 bp proximal
Rr168144	regulatory region 168144	within coordinates
Rr400419	regulatory region 400419	720 bp downstream
Tlnrd1	talin rod domain containing 1	955 bp upstream
Tssr67581	transcription start site region 67581	1651 bp downstream
Tssr67582	transcription start site region 67582	1628 bp downstream
Tssr67583	transcription start site region 67583	1556 bp downstream
Tssr67584	transcription start site region 67584	1415 bp downstream
Tssr73402	transcription start site region 73402	1826 bp upstream
Tssr73403	transcription start site region 73403	1726 bp upstream
Tssr73404	transcription start site region 73404	1466 bp upstream
Tssr73405	transcription start site region 73405	1126 bp upstream
Tssr73406	transcription start site region 73406	1043 bp upstream
Tssr73407	transcription start site region 73407	1010 bp upstream
Tssr73408	transcription start site region 73408	981 bp upstream
Tssr73409	transcription start site region 73409	960 bp upstream