rs257734373 SNP Detail

Summary

• ID
  rs257734373
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152493425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGTGTCTG TGTGTCTGTG TGTCTGTGTG TGTCTGTGTG
  TGTCTGTGTG TGTGTGGTTA TATGTGTTGT ATATATGAAC AGAAGTGTGT GCGTGTGTAT
  W
  TGTGTATGTG TGCATGTGTG TGGTATGTGT ATGTGTTGTA TACATGTTGG GTGGTATGCA
  TGTGTGTGGT TTGTGTATAT GTGTGGTATG TATGTATTG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	I/LnJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	SJL/J	ST/bJ
ss356155692	MGP_WTSI_2_152477241	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	A	T	T	T	A	T	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	I/LnJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	SJL/J	ST/bJ
rs257734373					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	A	T	T	T	A	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356155692	MGP_WTSI_2_152477241	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152493425 () rs orientation: forward

Symbol	Name	Function Class
1700030C14Rik	RIKEN cDNA 1700030C14 gene	1378 bp downstream
D2Ertd691e	DNA segment, Chr 2, ERATO Doi 691, expressed	389 bp distal
Rr374088	regulatory region 374088	592 bp upstream
Rr567410	regulatory region 567410	1347 bp proximal