rs257737987 SNP Detail

Summary

• ID
  rs257737987
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30307126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCA TTTTTGTGGC GCCCCCCCCC
  C
  AAATATATGA ACACGTGGAA TTCAA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320221004	CHEV_2_30272634	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257737987					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30307126 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11436	CpG island 11436	435 bp distal
Crat	carnitine acetyltransferase	1524 bp upstream
Gm16323	predicted gene 16323	1776 bp downstream
Ptpa	protein phosphatase 2 protein activator	within coordinates
Rr554312	regulatory region 554312	1601 bp distal
Rr554313	regulatory region 554313	962 bp distal
Rr554314	regulatory region 554314	within coordinates
Rr554315	regulatory region 554315	1933 bp proximal
Tssr17115	transcription start site region 17115	1431 bp downstream
Tssr17116	transcription start site region 17116	1037 bp downstream
Tssr17117	transcription start site region 17117	1024 bp downstream
Tssr17118	transcription start site region 17118	967 bp downstream
Tssr17119	transcription start site region 17119	893 bp downstream
Tssr23371	transcription start site region 23371	1746 bp upstream
Tssr23372	transcription start site region 23372	1704 bp upstream
Tssr23373	transcription start site region 23373	1685 bp upstream
Tssr23374	transcription start site region 23374	1665 bp upstream
Tssr23375	transcription start site region 23375	1609 bp upstream
Tssr23376	transcription start site region 23376	1554 bp upstream
Tssr23377	transcription start site region 23377	1502 bp upstream
Tssr23378	transcription start site region 23378	1490 bp upstream
Tssr23379	transcription start site region 23379	1406 bp upstream
Tssr23380	transcription start site region 23380	1340 bp upstream
Tssr23381	transcription start site region 23381	1069 bp upstream