rs257747310 SNP Detail

Summary

• ID
  rs257747310
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93018418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTG TTTATTTCGC TCTCGGCCTC
  Y
  TCCAGGGCTT TATCTCTTTG ATTCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320395090	CHEV_2_93028230	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257747310					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93018418 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11943	CpG island 11943			within coordinates
Rr561108	regulatory region 561108			1525 bp distal
Rr561109	regulatory region 561109			479 bp distal
Rr561110	regulatory region 561110			635 bp distal
Rr561111	regulatory region 561111			within coordinates
Rr561112	regulatory region 561112			893 bp proximal
Rr561113	regulatory region 561113			1109 bp proximal
Trp53i11	transformation related protein 53 inducible protein 11			Intron
				Noncoding-Transcript-Variant
Tssr18978	transcription start site region 18978			1265 bp downstream
Tssr18979	transcription start site region 18979			520 bp downstream
Tssr18980	transcription start site region 18980			503 bp downstream
Tssr18981	transcription start site region 18981			432 bp downstream
Tssr18982	transcription start site region 18982			290 bp downstream