rs257749746 SNP Detail

Summary

• ID
  rs257749746
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:52117214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTCCCAT GTCCTCTTCT
  ATAGGGCGGG CATATATGCA GGCTGTGCCT GAATGTTGTA TACATAGTAA ATAAATACAT
  CTTTTAGAAA AGAAAAGAAG GGGTTGGGGA TTTAGCTCAG TGGTAGAGTG CTTGCTTAGC
  AGGCACAAGG CCCAGGGTTT GGTCCTCAGC TCCGGGGATG GGGGAGGGGG GAGAGAGAGA
  R
  AAAAAAAAAA AAACCAATGA GCTCATATAG AGGTTCAGAA GTGTTGCCCC CAGTGGTCAG
  CTCTGACACA AGATATTTTA GACATTCATA TTAGTCCTTT ATTTAGAGGT AATAGATATT
  TAAAAGTTTA TATTGACCTT TAACTTGATG GGTCCTATGT ATAAACCTTT GTGGAATCTC
  TTAAAATTAA CAAATCTCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	ZALENDE/EiJ
ss383370569	MGP_WTSI_11_52039889	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	ZALENDE/EiJ
rs257749746					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383370569	MGP_WTSI_11_52039889	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:52117214 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2851	CpG island 2851	1891 bp distal
Gm73588	predicted gene, 73588	894 bp downstream
Rr386070	regulatory region 386070	1471 bp downstream
Rr386071	regulatory region 386071	442 bp upstream
Rr446812	regulatory region 446812	1749 bp distal
Rr446813	regulatory region 446813	1325 bp distal
Tssr3490	transcription start site region 3490	1746 bp downstream
Tssr101318	transcription start site region 101318	1704 bp downstream