rs257761645 SNP Detail

Summary

• ID
  rs257761645
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:69857191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACGC CCCTCTGCCC AGATTTTTTT
  K
  GGGGGGGTTT CCTGGGCGAA GCACC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323732409	CHEV_11_69779867	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257761645					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69857191 () rs orientation: forward

Symbol	Name	Function Class
Cldn7	claudin 7	Intron
Elp5	elongator acetyltransferase complex subunit 5	1859 bp downstream
Rr450180	regulatory region 450180	1520 bp distal
Rr450181	regulatory region 450181	959 bp distal
Tssr3566	transcription start site region 3566	509 bp upstream
Tssr102579	transcription start site region 102579	1554 bp downstream
Tssr102580	transcription start site region 102580	855 bp downstream
Tssr102581	transcription start site region 102581	744 bp downstream
Tssr102582	transcription start site region 102582	670 bp downstream
Tssr102583	transcription start site region 102583	624 bp downstream
Tssr102584	transcription start site region 102584	465 bp downstream
Tssr102585	transcription start site region 102585	531 bp upstream
Tssr108899	transcription start site region 108899	1122 bp upstream