rs257766945 SNP Detail

Summary

• ID
  rs257766945
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141546851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGAGAAG GAGAAGCGTT
  GCTGCTGTGT CTTCTGTCGA CCCCTCCCTT TCCGGTCCAG GTGACCCTGT CCCTTCCACA
  AGGTTGCTGA ATTTGGCCAG GTTAGTTTGC ATTGTGTCCT CAGTTGATTG GTTGGTGGTC
  TGGCTACTTA CTGGTGATTG GTTCGGGGTG AGCATCTGAC TCAACCCTAA AGCCAATGAG
  T
  TCCTTGCTCT GGGAGTCTGG CGTGGGCAGT GGCTGCCATT TTCTTTTGTT GGAGAAGGAT
  GAGGCAGAAA AGACTCGGAA GGAGAGTTTC TGGTTTCTTC CAGGCTCCAC ACGGCCTTGA
  TCTAGAATGT TCCTGACATC TAGCTATGTG TCTGCCCTTG GCTTAGAATT CCTCTTTTTG
  CGGGGCTAGT TCCACAGGTT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321390079	CHEV_4_141375455	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257766945					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141546851 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	463 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	311 bp proximal
Gm56298	predicted gene, 56298	within coordinates
Rr603893	regulatory region 603893	581 bp distal
Tssr40105	transcription start site region 40105	1641 bp downstream
Tssr40106	transcription start site region 40106	1610 bp downstream
Tssr40107	transcription start site region 40107	1558 bp downstream
Tssr40108	transcription start site region 40108	496 bp downstream
Tssr40109	transcription start site region 40109	461 bp downstream
Tssr40110	transcription start site region 40110	438 bp downstream
Tssr40111	transcription start site region 40111	1785 bp upstream
Tssr40112	transcription start site region 40112	1813 bp upstream
Tssr40113	transcription start site region 40113	1842 bp upstream
Tssr44369	transcription start site region 44369	1643 bp upstream
Tssr44370	transcription start site region 44370	1603 bp upstream
Tssr44371	transcription start site region 44371	1572 bp upstream
Tssr44372	transcription start site region 44372	1541 bp upstream
Tssr44373	transcription start site region 44373	1254 bp upstream
Tssr44374	transcription start site region 44374	408 bp upstream
Tssr44375	transcription start site region 44375	175 bp upstream
Tssr44376	transcription start site region 44376	157 bp upstream
Tssr44377	transcription start site region 44377	444 bp downstream
Tssr44378	transcription start site region 44378	563 bp downstream
Tssr44379	transcription start site region 44379	1812 bp downstream
Tssr44380	transcription start site region 44380	1824 bp downstream