rs257767056 SNP Detail

Summary

• ID
  rs257767056
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:86826546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGTTGCCA ACCAAATGTG
  GAAAATCCTT TAAACAAGGT GGCTTTCCAT TTTGGCTACA CTGAAATCAT CTGAGGAACT
  TTCAAAACTC TAAACGCCCA AGTCATACCC TAAACCAAGC ACATCAGAAT ATCTAAGGGG
  TGGGGCCGGG TCCGATATTT TAAAAAGTGC CCAGCACGGT CCAAAGTGAA GACAGGCTGA
  S
  TGAGACTTTT TCTGTGCTGG CTTGCCTCTC TTGATCTCCA GTGCCTTGTG CCACACATGA
  AACCAGAAAA GCCAACCTAG AACGAGTCAG AACGAGCTAG CTGTGCACAG AAGGTACAAT
  GGGATCCCAA ACACAGGAAC AGCACAGGTA CTGCACTGGC CTCTACCAAA GGTTACCCAG
  CGCCTCACTG GAGAAACACG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358764686	MGP_WTSI_3_86723161	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257767056					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358764686	MGP_WTSI_3_86723161	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86826546 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13328	CpG island 13328	284 bp proximal
Dclk2	doublecortin-like kinase 2	within coordinates
Rr77821	regulatory region 77821	within coordinates
Rr375296	regulatory region 375296	1914 bp downstream
Tssr33913	transcription start site region 33913	1094 bp downstream
Tssr33914	transcription start site region 33914	1124 bp downstream
Tssr33915	transcription start site region 33915	1156 bp downstream
Tssr33916	transcription start site region 33916	1249 bp downstream
Tssr33917	transcription start site region 33917	1304 bp downstream
Tssr33918	transcription start site region 33918	1591 bp downstream