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rs257767129 SNP Detail
Summary
  • ID
    rs257767129
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr19:5848541 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACATCCCCCC AAAATTGCCC
ACACTAACTA CAGACAACAA ACAAGACTTT ATTTAAATAA GGAGACAGCC TTCTAAATAC
ATACATTCTC TAGTGAAGTA TTTTATTAAT TTGTATAATT TAATGATTTT AAGCACAAGT
ACATTGGAGC ACATTTAAAT TTTAGCAATA TGAACATCTA ATTTTCAGCA CATAATGATC
Y
CTTTCATGGG GTCTTCAAGA TAAAGATTCC TTAATCTTGT AAGCAATGTA ATTAAAGTAG
GCATTAATCA TGTAGGCTTT TGTGTTGAAG TTTACGATGC AAAAGCCTAT TAGCTATCCC
ATCATGAAAG CCCATCGGTG CAAGGCTTAG GAATTTTTAA GAGGCTGGAT GGGAAAACTA
CTCAAAATTC TGAACTGCCT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss401662581 MGP_WTSI_19_5798513 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257767129 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss401662581 MGP_WTSI_19_5798513 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:5848541 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gm55521 predicted gene, 55521 487 bp downstream
Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) within coordinates
Tssr5415 transcription start site region 5415 1647 bp upstream
Tssr5416 transcription start site region 5416 1198 bp upstream
Tssr5417 transcription start site region 5417 513 bp downstream
Tssr5418 transcription start site region 5418 996 bp downstream
Tssr5419 transcription start site region 5419 1650 bp downstream
Tssr5420 transcription start site region 5420 1667 bp downstream
Tssr157647 transcription start site region 157647 1943 bp upstream
Tssr157648 transcription start site region 157648 1776 bp upstream
Tssr157649 transcription start site region 157649 1684 bp upstream
Tssr157650 transcription start site region 157650 1619 bp upstream
Tssr157651 transcription start site region 157651 1549 bp upstream
Tssr157652 transcription start site region 157652 1409 bp upstream
Tssr157653 transcription start site region 157653 1325 bp upstream
Tssr157654 transcription start site region 157654 1271 bp upstream
Tssr157655 transcription start site region 157655 1245 bp upstream
Tssr157656 transcription start site region 157656 1212 bp upstream
Tssr157657 transcription start site region 157657 1092 bp upstream
Tssr157658 transcription start site region 157658 986 bp upstream
Tssr157659 transcription start site region 157659 882 bp upstream
Tssr157660 transcription start site region 157660 786 bp upstream
Tssr157661 transcription start site region 157661 753 bp upstream
Tssr157662 transcription start site region 157662 660 bp upstream
Tssr157663 transcription start site region 157663 599 bp upstream
Tssr157664 transcription start site region 157664 485 bp upstream
Tssr157665 transcription start site region 157665 476 bp upstream
Tssr157666 transcription start site region 157666 444 bp upstream
Tssr157667 transcription start site region 157667 190 bp upstream
Tssr157668 transcription start site region 157668 149 bp upstream
Tssr157669 transcription start site region 157669 130 bp upstream
Tssr157670 transcription start site region 157670 114 bp upstream
Tssr157671 transcription start site region 157671 93 bp upstream
Tssr157672 transcription start site region 157672 43 bp upstream
Tssr157673 transcription start site region 157673 9 bp upstream
Tssr157674 transcription start site region 157674 within coordinates
Tssr157675 transcription start site region 157675 11 bp downstream
Tssr157676 transcription start site region 157676 22 bp downstream
Tssr157677 transcription start site region 157677 44 bp downstream
Tssr157678 transcription start site region 157678 56 bp downstream
Tssr157679 transcription start site region 157679 93 bp downstream
Tssr157680 transcription start site region 157680 148 bp downstream
Tssr157681 transcription start site region 157681 177 bp downstream
Tssr157682 transcription start site region 157682 195 bp downstream
Tssr157683 transcription start site region 157683 221 bp downstream
Tssr157684 transcription start site region 157684 237 bp downstream
Tssr157685 transcription start site region 157685 247 bp downstream
Tssr157686 transcription start site region 157686 262 bp downstream
Tssr157687 transcription start site region 157687 331 bp downstream
Tssr157688 transcription start site region 157688 381 bp downstream
Tssr157689 transcription start site region 157689 412 bp downstream
Tssr157690 transcription start site region 157690 490 bp downstream
Tssr157691 transcription start site region 157691 536 bp downstream
Tssr157692 transcription start site region 157692 590 bp downstream
Tssr157693 transcription start site region 157693 647 bp downstream
Tssr157694 transcription start site region 157694 705 bp downstream
Tssr157695 transcription start site region 157695 769 bp downstream
Tssr157696 transcription start site region 157696 790 bp downstream
Tssr157697 transcription start site region 157697 839 bp downstream
Tssr157698 transcription start site region 157698 855 bp downstream
Tssr157699 transcription start site region 157699 913 bp downstream
Tssr157700 transcription start site region 157700 962 bp downstream
Tssr157701 transcription start site region 157701 980 bp downstream
Tssr157702 transcription start site region 157702 1016 bp downstream
Tssr157703 transcription start site region 157703 1067 bp downstream
Tssr157704 transcription start site region 157704 1093 bp downstream
Tssr157705 transcription start site region 157705 1114 bp downstream
Tssr157706 transcription start site region 157706 1162 bp downstream
Tssr157707 transcription start site region 157707 1208 bp downstream
Tssr157708 transcription start site region 157708 1218 bp downstream
Tssr157709 transcription start site region 157709 1230 bp downstream
Tssr157710 transcription start site region 157710 1249 bp downstream
Tssr157711 transcription start site region 157711 1268 bp downstream
Tssr157712 transcription start site region 157712 1305 bp downstream
Tssr157713 transcription start site region 157713 1332 bp downstream
Tssr157714 transcription start site region 157714 1383 bp downstream
Tssr157715 transcription start site region 157715 1400 bp downstream
Tssr157716 transcription start site region 157716 1444 bp downstream
Tssr157717 transcription start site region 157717 1471 bp downstream
Tssr157718 transcription start site region 157718 1516 bp downstream
Tssr157719 transcription start site region 157719 1570 bp downstream
Tssr157720 transcription start site region 157720 1589 bp downstream
Tssr157721 transcription start site region 157721 1625 bp downstream
Tssr157722 transcription start site region 157722 1642 bp downstream
Tssr157723 transcription start site region 157723 1717 bp downstream
Tssr157724 transcription start site region 157724 1726 bp downstream
Tssr157725 transcription start site region 157725 1772 bp downstream
Tssr157726 transcription start site region 157726 1777 bp downstream
Tssr157727 transcription start site region 157727 1792 bp downstream
Tssr157728 transcription start site region 157728 1889 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory